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The Resource Biomedical image analysis recipes in MATLAB : for life scientists and engineers, Constantino Carlos Reyes-Aldasoro, (electronic book)

Biomedical image analysis recipes in MATLAB : for life scientists and engineers, Constantino Carlos Reyes-Aldasoro, (electronic book)

Label
Biomedical image analysis recipes in MATLAB : for life scientists and engineers
Title
Biomedical image analysis recipes in MATLAB
Title remainder
for life scientists and engineers
Statement of responsibility
Constantino Carlos Reyes-Aldasoro
Creator
Subject
Language
eng
Summary
As its title suggests, this innovative book has been written for life scientists needing to analyse their data sets, and programmers, wanting a better understanding of the types of experimental images life scientists investigate on a regular basis. Each chapter presents one self-contained biomedical experiment to be analysed. Part I of the book presents its two basic ingredients: essential concepts of image analysis and Matlab. In Part II, algorithms and techniques are shown as series of 'recipes' or solved examples that show how specific techniques are applied to a biomedical experiments like
Member of
Cataloging source
DLC
http://library.link/vocab/creatorName
Reyes-Aldasoro, Constantino Carlos
Dewey number
610.28/4
Illustrations
illustrations
Index
index present
LC call number
R857.O6
LC item number
R49 2015
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
http://library.link/vocab/subjectName
  • Diagnostic imaging
  • Imaging systems in medicine
Label
Biomedical image analysis recipes in MATLAB : for life scientists and engineers, Constantino Carlos Reyes-Aldasoro, (electronic book)
Instantiates
Publication
Note
8.4 Recipe 4: Three-Dimensional Graphics
Bibliography note
Includes bibliographical references and index
Contents
  • Title Page; Copyright Page; Contents; Preface; Acknowledgements; About the Companion Website; Chapter 1 The Basic Ingredients; 1.1 The Matlab Environment; 1.2 Introduction to Matlab; 1.3 Operations with Matrices; 1.4 Combining Matrices; 1.5 Addressing a Matrix; 1.6 Mathematical Functions and Graphical Display; 1.7 Random Numbers; 1.8 Statistics in Matlab; 1.9 Displaying Two-Dimensional Matrices; 1.10 Scripts, Functions and Shortcuts; 1.11 Using Help; Chapter 2 Introduction to Images; 2.1 An Image as a Matrix; 2.2 Reading Images; 2.3 Displaying Images; 2.4 Colormap
  • 2.5 Thresholding and Manipulating Values of Images2.6 Converting Images into Doubles; 2.7 Save Your Code and Data; Chapter 3 Introduction to Colour; 3.1 Mixing and Displaying Colours; Chapter 4 Western Blots; 4.1 Recipe 1: Many Ways to Display a Western Blot; 4.2 Recipe 2: Investigating the Numbers That Make a Western Blot; 4.3 Recipe 3: Image Histograms; 4.4 Recipe 4: Transforming an Image of a Western Blot; 4.5 Recipe 5: Quantification of the Data; 4.6 Recipe 6: Investigating Position of Bands; Chapter 5 Scratch Wound Assays; 5.1 Analysis of Scratch Wound Assays
  • 5.2 Recipe 1: Low Pass Filtering Scratch Wound Assays in the Spatial Domain5.3 Recipe 2: High Pass Filtering Scratch Wound Assays in the Spatial Domain; 5.4 Recipe 3: Combining Filters and Morphological Operations; 5.5 Recipe 4: Sensitivy to Thresholds and Hysteresis Thresholding; 5.6 Recipe 5: Morphological Operators; 5.7 Recipe 6: Measuring Distances Between Cellular Boundaries; 5.8 Recipe 7: Introduction to Fourier Analysis; 5.9 Recipe 8: Filtering Scratch Wound Assays in the Fourier Domain; References; Chapter 6 Bright Field Microscopy
  • 6.1 Recipe 1: Changing the Brightness and Contrast of an Image6.2 Recipe 2: Shading Correction: Estimation of Shading Component as a Plane; 6.3 Recipe 3: Estimation of Shading Component with Filters, Morphological Operators and Envelopes; 6.4 Recipe 4: Mosaicking and Stitching; 6.5 Recipe 5: Pixel Intensity and Histograms in Immunohistochemistry; 6.6 Recipe 6: Hue-Saturation-Value; 6.7 Recipe 7: Multidimensional Histograms; Reference; Chapter 7 Fluorescence Microscopy; 7.1 Recipe 1: Separating and Combining Colour Channels; 7.2 Recipe 2: Investigating the Scaling of Values
  • 7.3 Recipe 3: Automatic Threshold Selection7.4 Recipe 4: Measuring Absolute and Relative Areas; 7.5 Recipe 5: Counting Nuclei; 7.6 Recipe 6: Quantification of Region Properties Beyond the Area; 7.7 Recipe 7: Dividing an Image into Regions; 7.8 Recipe 8: Batch Processing and Montages; 7.9 Recipe 9: A Myriad of Measurements; References; Chapter 8 Creating Publication-Quality Figures from Matlab; 8.1 Recipe 1: Modifying the Characteristics of the Figures; 8.2 Recipe 2: Numerous Plots in One Figure; 8.3 Recipe 3: Three-Dimensional Ribbons with Different Annotations
Control code
022381673
Extent
1 online resource (xi, 404 p.)
Form of item
  • online
  • electronic
Isbn
9781118657546
Lccn
2015002819
Reproduction note
Electronic resource
Specific material designation
remote
Label
Biomedical image analysis recipes in MATLAB : for life scientists and engineers, Constantino Carlos Reyes-Aldasoro, (electronic book)
Publication
Note
8.4 Recipe 4: Three-Dimensional Graphics
Bibliography note
Includes bibliographical references and index
Contents
  • Title Page; Copyright Page; Contents; Preface; Acknowledgements; About the Companion Website; Chapter 1 The Basic Ingredients; 1.1 The Matlab Environment; 1.2 Introduction to Matlab; 1.3 Operations with Matrices; 1.4 Combining Matrices; 1.5 Addressing a Matrix; 1.6 Mathematical Functions and Graphical Display; 1.7 Random Numbers; 1.8 Statistics in Matlab; 1.9 Displaying Two-Dimensional Matrices; 1.10 Scripts, Functions and Shortcuts; 1.11 Using Help; Chapter 2 Introduction to Images; 2.1 An Image as a Matrix; 2.2 Reading Images; 2.3 Displaying Images; 2.4 Colormap
  • 2.5 Thresholding and Manipulating Values of Images2.6 Converting Images into Doubles; 2.7 Save Your Code and Data; Chapter 3 Introduction to Colour; 3.1 Mixing and Displaying Colours; Chapter 4 Western Blots; 4.1 Recipe 1: Many Ways to Display a Western Blot; 4.2 Recipe 2: Investigating the Numbers That Make a Western Blot; 4.3 Recipe 3: Image Histograms; 4.4 Recipe 4: Transforming an Image of a Western Blot; 4.5 Recipe 5: Quantification of the Data; 4.6 Recipe 6: Investigating Position of Bands; Chapter 5 Scratch Wound Assays; 5.1 Analysis of Scratch Wound Assays
  • 5.2 Recipe 1: Low Pass Filtering Scratch Wound Assays in the Spatial Domain5.3 Recipe 2: High Pass Filtering Scratch Wound Assays in the Spatial Domain; 5.4 Recipe 3: Combining Filters and Morphological Operations; 5.5 Recipe 4: Sensitivy to Thresholds and Hysteresis Thresholding; 5.6 Recipe 5: Morphological Operators; 5.7 Recipe 6: Measuring Distances Between Cellular Boundaries; 5.8 Recipe 7: Introduction to Fourier Analysis; 5.9 Recipe 8: Filtering Scratch Wound Assays in the Fourier Domain; References; Chapter 6 Bright Field Microscopy
  • 6.1 Recipe 1: Changing the Brightness and Contrast of an Image6.2 Recipe 2: Shading Correction: Estimation of Shading Component as a Plane; 6.3 Recipe 3: Estimation of Shading Component with Filters, Morphological Operators and Envelopes; 6.4 Recipe 4: Mosaicking and Stitching; 6.5 Recipe 5: Pixel Intensity and Histograms in Immunohistochemistry; 6.6 Recipe 6: Hue-Saturation-Value; 6.7 Recipe 7: Multidimensional Histograms; Reference; Chapter 7 Fluorescence Microscopy; 7.1 Recipe 1: Separating and Combining Colour Channels; 7.2 Recipe 2: Investigating the Scaling of Values
  • 7.3 Recipe 3: Automatic Threshold Selection7.4 Recipe 4: Measuring Absolute and Relative Areas; 7.5 Recipe 5: Counting Nuclei; 7.6 Recipe 6: Quantification of Region Properties Beyond the Area; 7.7 Recipe 7: Dividing an Image into Regions; 7.8 Recipe 8: Batch Processing and Montages; 7.9 Recipe 9: A Myriad of Measurements; References; Chapter 8 Creating Publication-Quality Figures from Matlab; 8.1 Recipe 1: Modifying the Characteristics of the Figures; 8.2 Recipe 2: Numerous Plots in One Figure; 8.3 Recipe 3: Three-Dimensional Ribbons with Different Annotations
Control code
022381673
Extent
1 online resource (xi, 404 p.)
Form of item
  • online
  • electronic
Isbn
9781118657546
Lccn
2015002819
Reproduction note
Electronic resource
Specific material designation
remote

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