Coverart for item
The Resource RNA bioinformatics, edited by Ernesto Picardi, (electronic book)

RNA bioinformatics, edited by Ernesto Picardi, (electronic book)

Label
RNA bioinformatics
Title
RNA bioinformatics
Statement of responsibility
edited by Ernesto Picardi
Contributor
Editor
Subject
Genre
Language
eng
Summary
This volume""provides an overview of RNA bioinformatics methodologies, including basic strategies to predict secondary and tertiary structures, and novel algorithms based on massive RNA sequencing. Interest in RNA bioinformatics has rapidly increased thanks to the recent high-throughput sequencing technologies allowing scientists to investigate complete transcriptomes at single nucleotide resolution. Adopting advanced computational technics, scientists are now able to conduct more in-depth studies and present them to you in this book. Written in the highly successful "Methods of Molecular Biology" series format, chapters include introductions to their respective topics, lists of the necessary materials and equipment, step-by-step, readily reproducible bioinformatics protocols, and key tips to avoid known pitfalls. Authoritative and practical, "RNA Bioinformatics" seeks to aid scientists in the further study of bioinformatics and computational biology of RNA."
Member of
Cataloging source
RML
Dewey number
572.80285
Illustrations
illustrations
Index
index present
LC call number
QH324.2
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
http://library.link/vocab/relatedWorkOrContributorName
Picardi, Ernesto
Series statement
Methods in Molecular Biology,
Series volume
1269
http://library.link/vocab/subjectName
  • Bioinformatics
  • Computational biology
  • RNA
  • RNA
  • RNA
  • Computational Biology
  • Sequence Analysis, RNA
Label
RNA bioinformatics, edited by Ernesto Picardi, (electronic book)
Instantiates
Publication
Copyright
Antecedent source
unknown
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
  • Drawing and editing the secondary structure(s) of RNA
  • Yann Ponty and Fabrice Leclerc
  • Modeling and predicting RNA three-dimensional structures
  • Jérôme Waldispühl and Vladimir Reinharz
  • Fast prediction of RNA-RNA interaction using heuristic algorithm
  • Soheila Montaseri
  • Quality control of RNA-Seq experiments
  • Xing Li ... [and 3 others]
  • Accurate mapping of RNA-Seq data
  • Kin Fai Au
  • Free energy minimization to predict RNA secondary structures and computational RNA design
  • Quantifying entire transcriptomes by aligned RNA-Seq data
  • Raffaele A. Calogero and Francesca Zolezzi
  • Transcriptome assembly and alternative splicing analysis
  • Paola Bonizzoni ... [and 5 others]
  • Detection of post-transcriptional RNA editing events
  • Ernesto Picardi ... [and 3 others]
  • Prediction of miRNA targets
  • Anastasis Oulas ... [and 6 others]
  • Using deep sequencing data for identification of editing sites in mature miRNAs
  • Shahar Alon and Eli Eisenberg
  • Alexander Churkin, Lina Weinbrand, and Danny Barash
  • NGS-trex : an automatic analysis workflow for RNA-seq data
  • Ilenia Boria ... [and 3 others]
  • e-DNA meta-barcoding : from NGS raw data to taxonomic profiling
  • Fosso Bruno, Marzano Marinella, and Monica Santamaria
  • Deciphering metatranscriptomic data
  • Evguenia Kopylova ... [and 6 others]
  • RIP-seq data analysis to determine RNA-protein associations
  • Federico Zambelli and Giulio Pavesi
  • ViennaRNA eeb services
  • Andreas R. Gruber, Stephan H. Bernhart, and Ronny Lorenz
  • RNA secondary structure prediction from multi-aligned sequences
  • Exploring the RNA editing potential of RNA-Seq data by ExpEdit
  • Mattia D'Antonio ... [and 4 others]
  • Guideline for the annotation of UTR regulatory elements in the UTRsite collection
  • Matteo Giulietti ... [and 3 others]
  • Rfam : annotating families of non-coding RNA sequences
  • Jennifer Daub ... [and 3 others]
  • ASPicDB : a database web tool for alternative splicing analysis
  • Mattia D'Antonio ... [and 5 others]
  • Analysis of alternative splicing events in custom gene datasets by AStalavista
  • Sylvain Foissac and Michael Sammeth
  • Michiaki Hamada
  • Computational design of artificial RNA molecules for gene regulation
  • Alessandro Laganà ... [and 6 others]
  • Simple protocol for the inference of RNA global pairwise alignments
  • Eugenio Mattei, Manuela Helmer-Citterich, and Fabrizio Ferrè
  • De novo secondary structure motif discovery using RNA profile
  • Federico Zambelli and Giulio Pavesi
Control code
SPR900643323
Dimensions
unknown
Extent
1 online resource (xii, 415 pages)
File format
unknown
Form of item
online
Isbn
9781493922918
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other control number
9781493922901
Other physical details
illustrations (some color).
Quality assurance targets
not applicable
Reformatting quality
unknown
Reproduction note
Electronic resource.
Sound
unknown sound
Specific material designation
remote
Label
RNA bioinformatics, edited by Ernesto Picardi, (electronic book)
Publication
Copyright
Antecedent source
unknown
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
  • Drawing and editing the secondary structure(s) of RNA
  • Yann Ponty and Fabrice Leclerc
  • Modeling and predicting RNA three-dimensional structures
  • Jérôme Waldispühl and Vladimir Reinharz
  • Fast prediction of RNA-RNA interaction using heuristic algorithm
  • Soheila Montaseri
  • Quality control of RNA-Seq experiments
  • Xing Li ... [and 3 others]
  • Accurate mapping of RNA-Seq data
  • Kin Fai Au
  • Free energy minimization to predict RNA secondary structures and computational RNA design
  • Quantifying entire transcriptomes by aligned RNA-Seq data
  • Raffaele A. Calogero and Francesca Zolezzi
  • Transcriptome assembly and alternative splicing analysis
  • Paola Bonizzoni ... [and 5 others]
  • Detection of post-transcriptional RNA editing events
  • Ernesto Picardi ... [and 3 others]
  • Prediction of miRNA targets
  • Anastasis Oulas ... [and 6 others]
  • Using deep sequencing data for identification of editing sites in mature miRNAs
  • Shahar Alon and Eli Eisenberg
  • Alexander Churkin, Lina Weinbrand, and Danny Barash
  • NGS-trex : an automatic analysis workflow for RNA-seq data
  • Ilenia Boria ... [and 3 others]
  • e-DNA meta-barcoding : from NGS raw data to taxonomic profiling
  • Fosso Bruno, Marzano Marinella, and Monica Santamaria
  • Deciphering metatranscriptomic data
  • Evguenia Kopylova ... [and 6 others]
  • RIP-seq data analysis to determine RNA-protein associations
  • Federico Zambelli and Giulio Pavesi
  • ViennaRNA eeb services
  • Andreas R. Gruber, Stephan H. Bernhart, and Ronny Lorenz
  • RNA secondary structure prediction from multi-aligned sequences
  • Exploring the RNA editing potential of RNA-Seq data by ExpEdit
  • Mattia D'Antonio ... [and 4 others]
  • Guideline for the annotation of UTR regulatory elements in the UTRsite collection
  • Matteo Giulietti ... [and 3 others]
  • Rfam : annotating families of non-coding RNA sequences
  • Jennifer Daub ... [and 3 others]
  • ASPicDB : a database web tool for alternative splicing analysis
  • Mattia D'Antonio ... [and 5 others]
  • Analysis of alternative splicing events in custom gene datasets by AStalavista
  • Sylvain Foissac and Michael Sammeth
  • Michiaki Hamada
  • Computational design of artificial RNA molecules for gene regulation
  • Alessandro Laganà ... [and 6 others]
  • Simple protocol for the inference of RNA global pairwise alignments
  • Eugenio Mattei, Manuela Helmer-Citterich, and Fabrizio Ferrè
  • De novo secondary structure motif discovery using RNA profile
  • Federico Zambelli and Giulio Pavesi
Control code
SPR900643323
Dimensions
unknown
Extent
1 online resource (xii, 415 pages)
File format
unknown
Form of item
online
Isbn
9781493922918
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other control number
9781493922901
Other physical details
illustrations (some color).
Quality assurance targets
not applicable
Reformatting quality
unknown
Reproduction note
Electronic resource.
Sound
unknown sound
Specific material designation
remote

Library Locations

Processing Feedback ...