Coverart for item
The Resource Research in computational molecular biology : 14th annual international conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010 : proceedings, Bonnie Berger (ed.), (electronic book)

Research in computational molecular biology : 14th annual international conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010 : proceedings, Bonnie Berger (ed.), (electronic book)

Label
Research in computational molecular biology : 14th annual international conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010 : proceedings
Title
Research in computational molecular biology
Title remainder
14th annual international conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010 : proceedings
Statement of responsibility
Bonnie Berger (ed.)
Creator
Contributor
Subject
Genre
Language
eng
Member of
Cataloging source
COO
Dewey number
572.80285
Illustrations
illustrations
Index
index present
LC call number
QH506
LC item number
.I4875 2010
Literary form
non fiction
http://bibfra.me/vocab/lite/meetingDate
2010
http://bibfra.me/vocab/lite/meetingName
International Conference on Research in Computational Molecular Biology
Nature of contents
  • dictionaries
  • bibliography
http://library.link/vocab/relatedWorkOrContributorName
Berger, Bonnie Anne
Series statement
  • Lecture notes in computer science,
  • Lecture notes in bioinformatics
  • LNCS sublibrary. SL 8, Bioinformatics
Series volume
6044.
http://library.link/vocab/subjectName
  • Molecular biology
  • Computational Biology
  • Gene Expression
  • Genomics
  • Sequence Analysis
Label
Research in computational molecular biology : 14th annual international conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010 : proceedings, Bonnie Berger (ed.), (electronic book)
Instantiates
Publication
Bibliography note
Includes bibliographical references and index
Contents
An algorithmic framework for predicting side-effects of drugs / Nir Atias and Roded Sharan -- SubMAP : aligning metabolic pathways with subnetwork mappings / Ferhat Ay and Tamer Kahveci -- Admixture aberration analysis : application to mapping in admixed population using pooled DNA / Sivan Bercovici and Dan Geiger -- Pathway-based functional analysis of metagenomes / Sivan Bercovici, Itai Sharon, Ron Y. Pinter, and Tomer Shlomi -- Hierarchical generative biclustering for microRNA expression analysis / José Caldas and Samuel Kaski -- Subnetwork state functions define dysregulated subnetworks in cancer / Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, and Mehmet Koyutürk -- Proteome coverage prediction for integrated proteomics datasets / Manfred Claassen, Ruedi Aebersold, and Joachim M. Buhmann -- Discovering regulatory overlapping RNA transcripts / Timothy Danford, Robin Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, and David Gifford -- Alignment-free phylogenetic reconstruction / Constantinos Daskalakis and Sebastien Roch -- Inference of isoforms from short sequence reads (extended abstract) / Jianxing Feng, Wei Li, and Tao Jiang -- The Clark phase-able sample size problem : long-range phasing and loss of heterozygosity in GWAS / Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, and Sorin Istrail -- A new algorithm for improving the resolution of cryo-EM density maps / Michael Hirsch, Bernhard Schölkopf, and Michael Habeck -- Towards automated structure-based NMR resonance assignment / Richard Jang, Xin Gao, and Ming Li -- Gapped spectral dictionaries and their applications for database searches of tandem mass spectra / Kyowon Jeong, Sangtae Kim, Nuno Bandeira, and Pavel A. Pevzner -- naiveBayesCall : an efficient model-based base-calling algorithm for high-throughput sequencing / Wei-Chun Kao and Yun S. Song -- Extracting between-pathway models from E-MAP interactions using expected graph compression / David R. Kelley and Carl Kingsford -- Simultaneous identification of causal genes and dys-regulated pathways in complex diseases / Yoo-Ah Kim, Stefan Wuchty, and Teresa M. Przytycka -- Incremental signaling pathway modeling by data integration / Geoffrey Koh, David Hsu, and P.S. Thiagarajan -- The Poisson margin test for normalisation free significance analysis of NGS data / Adam Kowalczyk, Justin Bedo, Thomas Conway, and Bryan Beresford-Smith -- Compressing genomic sequence fragments using SlimGene / Christos Kozanitis, Chris Saunders, Semyon Kruglyak, Vineet Bafna, and George Varghese -- On the genealogy of asexual diploids / Fumei Lam, Charles H. Langley, and Yun S. Song -- Genovo : de novo assembly for metagenomes / Jonathan Laserson, Vladimir Jojic, and Daphne Koller -- MoGUL : detecting common insertions and deletions in a population / Seunghak Lee, Eric Xing, and Michael Brudno -- Generalized Buneman pruning for inferring the most parsimonious multi-state phylogeny / Navodit Misra, Guy Blelloch, R. Ravi, and Russell Schwartz -- Seed design framework for mapping SOLiD reads / Laurent Noé, Marta Gîrdea, and Gregory Kucherov -- Accurate estimation of expression levels of homologous genes in RNA-seq experiments / Bogdan Paşaniuc, Noah Zaitlen, and Eran Halperin -- Cactus graphs for genome comparisons / Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, and David Haussler -- IDBA : a practical iterative de Bruijn graph de novo assembler / Yu Peng, Henry C.M. Leung, S.M. Yiu, and Francis Y.L. Chin -- Predicting nucleosome positioning using multiple evidence tracks / Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, and William Stafford Noble -- Dense subgraphs with restrictions and applications to gene annotation graphs / Barna Saha, Allison Hoch, Samir Khuller, Louiqa Raschid, and Xiao-Ning Zhang -- Time and space efficient RNA-RNA interaction prediction via sparse folding / Raheleh Salari, Mathias Möhl, Sebastian Will, S. Cenk Sahinalp, and Rolf Backofen -- HLA type inference via haplotypes identical by descent / Manu N. Setty, Alexander Gusev, and Itsik Pe'er -- Algorithms for detecting significantly mutated pathways in cancer / Fabio Vandin, Eli Upfal, and Benjamin J. Raphael -- Leveraging sequence classification by taxonomy-based multitask learning / Christian Widmer, Jose Leiva, Yasemin Altun, and Gunnar Rätsch -- A novel abundance-based algorithm for binning metagenomic sequences using l-tuples / Yu-Wei Wu and Yuzhen Ye -- A Markov random field framework for protein side-chain resonance assignment / Jianyang Zeng, Pei Zhou, and Bruce Randall Donald -- Genomic DNA k-mer spectra : models and modalities (abstract) / Benny Chor, David Horn, Nick Goldman, Yaron Levy, and Tim Massingham -- Deciphering the swine-flu pandemics of 1918 and 2009 (abstract) / Richard Goldstein, Mario dos Reis, Asif Tamuri, and Alan Hay -- Distinguishing direct versus indirect transcription factor-DNA interactions (abstract) / Raluca Gordân, Alexander J. Hartemink, and Martha L. Bulyk -- A self-regulatory system of interlinked signaling feedback loops controls mouse limb patterning (abstract) / Jean-Denis Benazet, Mirko Bischofberger, Eva Tiecke, Alexandre Gonalves, James F. Martin, Aime Zuniga, Felix Naef, and Rolf Zeller -- Automated high-dimensional flow cytometric data analysis (abstract) / Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Rossin, Tsung-I Lin, Lisa Maier, Clare Baecher-Allan, Geoffrey McLachlan, Pablo Tamayo, David Hafler, Philip De Jager, and Jill Mesirov -- Discovering transcriptional modules by combined analysis of expression profiles and regulatory sequences (abstract) / Yonit Halperin, Chaim Linhart, Igor Ulitsky, and Ron Shamir
Control code
SPR646810781
Dimensions
unknown
Extent
1 online resource (xvi, 582 p.)
Form of item
online
Isbn
9783642126833
Other physical details
ill. (some col.)
Publisher number
80013115
Specific material designation
remote
Label
Research in computational molecular biology : 14th annual international conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010 : proceedings, Bonnie Berger (ed.), (electronic book)
Publication
Bibliography note
Includes bibliographical references and index
Contents
An algorithmic framework for predicting side-effects of drugs / Nir Atias and Roded Sharan -- SubMAP : aligning metabolic pathways with subnetwork mappings / Ferhat Ay and Tamer Kahveci -- Admixture aberration analysis : application to mapping in admixed population using pooled DNA / Sivan Bercovici and Dan Geiger -- Pathway-based functional analysis of metagenomes / Sivan Bercovici, Itai Sharon, Ron Y. Pinter, and Tomer Shlomi -- Hierarchical generative biclustering for microRNA expression analysis / José Caldas and Samuel Kaski -- Subnetwork state functions define dysregulated subnetworks in cancer / Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, and Mehmet Koyutürk -- Proteome coverage prediction for integrated proteomics datasets / Manfred Claassen, Ruedi Aebersold, and Joachim M. Buhmann -- Discovering regulatory overlapping RNA transcripts / Timothy Danford, Robin Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, and David Gifford -- Alignment-free phylogenetic reconstruction / Constantinos Daskalakis and Sebastien Roch -- Inference of isoforms from short sequence reads (extended abstract) / Jianxing Feng, Wei Li, and Tao Jiang -- The Clark phase-able sample size problem : long-range phasing and loss of heterozygosity in GWAS / Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, and Sorin Istrail -- A new algorithm for improving the resolution of cryo-EM density maps / Michael Hirsch, Bernhard Schölkopf, and Michael Habeck -- Towards automated structure-based NMR resonance assignment / Richard Jang, Xin Gao, and Ming Li -- Gapped spectral dictionaries and their applications for database searches of tandem mass spectra / Kyowon Jeong, Sangtae Kim, Nuno Bandeira, and Pavel A. Pevzner -- naiveBayesCall : an efficient model-based base-calling algorithm for high-throughput sequencing / Wei-Chun Kao and Yun S. Song -- Extracting between-pathway models from E-MAP interactions using expected graph compression / David R. Kelley and Carl Kingsford -- Simultaneous identification of causal genes and dys-regulated pathways in complex diseases / Yoo-Ah Kim, Stefan Wuchty, and Teresa M. Przytycka -- Incremental signaling pathway modeling by data integration / Geoffrey Koh, David Hsu, and P.S. Thiagarajan -- The Poisson margin test for normalisation free significance analysis of NGS data / Adam Kowalczyk, Justin Bedo, Thomas Conway, and Bryan Beresford-Smith -- Compressing genomic sequence fragments using SlimGene / Christos Kozanitis, Chris Saunders, Semyon Kruglyak, Vineet Bafna, and George Varghese -- On the genealogy of asexual diploids / Fumei Lam, Charles H. Langley, and Yun S. Song -- Genovo : de novo assembly for metagenomes / Jonathan Laserson, Vladimir Jojic, and Daphne Koller -- MoGUL : detecting common insertions and deletions in a population / Seunghak Lee, Eric Xing, and Michael Brudno -- Generalized Buneman pruning for inferring the most parsimonious multi-state phylogeny / Navodit Misra, Guy Blelloch, R. Ravi, and Russell Schwartz -- Seed design framework for mapping SOLiD reads / Laurent Noé, Marta Gîrdea, and Gregory Kucherov -- Accurate estimation of expression levels of homologous genes in RNA-seq experiments / Bogdan Paşaniuc, Noah Zaitlen, and Eran Halperin -- Cactus graphs for genome comparisons / Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, and David Haussler -- IDBA : a practical iterative de Bruijn graph de novo assembler / Yu Peng, Henry C.M. Leung, S.M. Yiu, and Francis Y.L. Chin -- Predicting nucleosome positioning using multiple evidence tracks / Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, and William Stafford Noble -- Dense subgraphs with restrictions and applications to gene annotation graphs / Barna Saha, Allison Hoch, Samir Khuller, Louiqa Raschid, and Xiao-Ning Zhang -- Time and space efficient RNA-RNA interaction prediction via sparse folding / Raheleh Salari, Mathias Möhl, Sebastian Will, S. Cenk Sahinalp, and Rolf Backofen -- HLA type inference via haplotypes identical by descent / Manu N. Setty, Alexander Gusev, and Itsik Pe'er -- Algorithms for detecting significantly mutated pathways in cancer / Fabio Vandin, Eli Upfal, and Benjamin J. Raphael -- Leveraging sequence classification by taxonomy-based multitask learning / Christian Widmer, Jose Leiva, Yasemin Altun, and Gunnar Rätsch -- A novel abundance-based algorithm for binning metagenomic sequences using l-tuples / Yu-Wei Wu and Yuzhen Ye -- A Markov random field framework for protein side-chain resonance assignment / Jianyang Zeng, Pei Zhou, and Bruce Randall Donald -- Genomic DNA k-mer spectra : models and modalities (abstract) / Benny Chor, David Horn, Nick Goldman, Yaron Levy, and Tim Massingham -- Deciphering the swine-flu pandemics of 1918 and 2009 (abstract) / Richard Goldstein, Mario dos Reis, Asif Tamuri, and Alan Hay -- Distinguishing direct versus indirect transcription factor-DNA interactions (abstract) / Raluca Gordân, Alexander J. Hartemink, and Martha L. Bulyk -- A self-regulatory system of interlinked signaling feedback loops controls mouse limb patterning (abstract) / Jean-Denis Benazet, Mirko Bischofberger, Eva Tiecke, Alexandre Gonalves, James F. Martin, Aime Zuniga, Felix Naef, and Rolf Zeller -- Automated high-dimensional flow cytometric data analysis (abstract) / Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Rossin, Tsung-I Lin, Lisa Maier, Clare Baecher-Allan, Geoffrey McLachlan, Pablo Tamayo, David Hafler, Philip De Jager, and Jill Mesirov -- Discovering transcriptional modules by combined analysis of expression profiles and regulatory sequences (abstract) / Yonit Halperin, Chaim Linhart, Igor Ulitsky, and Ron Shamir
Control code
SPR646810781
Dimensions
unknown
Extent
1 online resource (xvi, 582 p.)
Form of item
online
Isbn
9783642126833
Other physical details
ill. (some col.)
Publisher number
80013115
Specific material designation
remote

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